PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00590g35003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21379.6 Da    PI: 9.4339
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00590g35003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93.1e-141663249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +i+n+  r+++f+kRr ++ K A+EL + C++++ +i+fs+++k + +
  Peinf101Scf00590g35003.1 16 KIQNEVDRYTSFCKRRSTLYKAASELAIQCNVDIGIILFSPKDKPFSF 63
                              599**************************************9986655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.825767IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-20878IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-11929IPR002100Transcription factor, MADS-box
PfamPF003197.6E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-112944IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-114465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEDKKTKGRQ KIPMVKIQNE VDRYTSFCKR RSTLYKAASE LAIQCNVDIG IILFSPKDKP  60
FSFIHPTVEL VIDRFLDPHA QLSESTRLVA AHARNKVNEL NRKTKELDKI EEATNKKAHA  120
YEKMEKVCHK GWWESIEHLN EDEIMKLEAW LKATIFNMDR RLKQLKNEAS TSASLGDAHN  180
APSPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.11e-72PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DM889e-60M1DM88_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912773e-59(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-29AGAMOUS-like 61